PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29842.m003531
Common NameLOC8277968, RCOM_0903280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 353aa    MW: 39819.9 Da    PI: 6.4016
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29842.m003531genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092813152155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yps++++  LA+++gL+++q+ +WF N+R ++
  29842.m003531 281 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 315
                    569*****************************885 PP

2ELK37.84e-13235256122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK qLlr YsgyLgsLkqEF+
  29842.m003531 235 ELKGQLLRRYSGYLGSLKQEFM 256
                    9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-2099143IPR005540KNOX1
PfamPF037903.5E-22101139IPR005540KNOX1
SMARTSM012563.3E-26148199IPR005541KNOX2
PfamPF037915.3E-21151198IPR005541KNOX2
SMARTSM011888.6E-8235256IPR005539ELK domain
PfamPF037891.7E-10235256IPR005539ELK domain
PROSITE profilePS5121310.912235255IPR005539ELK domain
PROSITE profilePS5007112.989255318IPR001356Homeobox domain
SMARTSM003897.4E-13257322IPR001356Homeobox domain
SuperFamilySSF466891.84E-19257332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28260320IPR009057Homeodomain-like
CDDcd000861.74E-12267319No hitNo description
PfamPF059206.3E-17275314IPR008422Homeobox KN domain
PROSITE patternPS000270293316IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGGSNSTSC MMAFGDNSNG LCPMMMMMPL MTSSHQHHHH HHHPNADLSS NTLFLPLPPT  60
NNQDQNRNSS SGSSMILDDH NPNTNTGCYF MDNNDAAAAS VKAKIMAHPH YHRLLAAYIN  120
CQKVGAPPEV VTRLEEACAS AATMGQAGTS CIGEDPALDQ FMEAYCEMLT KYEQELSKPF  180
KEAMLFLQRV ECQFKALTVA SPNSALGEAS DRNGSSEEEV DVNNNFIDPQ AEDQELKGQL  240
LRRYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSRHY KWPYPSESQK LALAESTGLD  300
QKQINNWFIN QRKRHWKPSE DMQFVVMDAT HPHYYMDNVL GNPFPMDISP ALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250259LKQEFMKKRK
2256260KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518420.10.0PREDICTED: homeobox protein SBH1
SwissprotP466081e-162HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLB9RXF10.0B9RXF1_RICCO; Homeobox protein knotted-1, putative
STRINGVIT_10s0116g00190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-145KNOX/ELK homeobox transcription factor